Modeling the 3D conformation of genomes / (Record no. 126852)
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| 000 -LEADER | |
|---|---|
| fixed length control field | 05694cam a2200649Ii 4500 |
| 001 - CONTROL NUMBER | |
| control field | 9781315144009 |
| 003 - CONTROL NUMBER IDENTIFIER | |
| control field | FlBoTFG |
| 005 - DATE AND TIME OF LATEST TRANSACTION | |
| control field | 20220509192932.0 |
| 006 - FIXED-LENGTH DATA ELEMENTS--ADDITIONAL MATERIAL CHARACTERISTICS--GENERAL INFORMATION | |
| fixed length control field | m o d |
| 007 - PHYSICAL DESCRIPTION FIXED FIELD--GENERAL INFORMATION | |
| fixed length control field | cr cnu|||unuuu |
| 008 - FIXED-LENGTH DATA ELEMENTS--GENERAL INFORMATION | |
| fixed length control field | 190114s2019 flu ob 001 0 eng d |
| 040 ## - CATALOGING SOURCE | |
| Original cataloging agency | OCoLC-P |
| Language of cataloging | eng |
| Description conventions | rda |
| -- | pn |
| Transcribing agency | OCoLC-P |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 9781351387002 |
| -- | (electronic bk.) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 1351387006 |
| -- | (electronic bk.) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 9781315144009 |
| -- | (electronic bk.) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 131514400X |
| -- | (electronic bk.) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 9781351386999 |
| -- | (electronic bk. : EPUB) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 1351386999 |
| -- | (electronic bk. : EPUB) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 9781351386982 |
| -- | (electronic bk. : Mobipocket) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| International Standard Book Number | 1351386980 |
| -- | (electronic bk. : Mobipocket) |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| Cancelled/invalid ISBN | 9781138500792 |
| 020 ## - INTERNATIONAL STANDARD BOOK NUMBER | |
| Cancelled/invalid ISBN | 1138500798 |
| 024 7# - OTHER STANDARD IDENTIFIER | |
| Standard number or code | 10.1201/9781315144009 |
| Source of number or code | doi |
| 035 ## - SYSTEM CONTROL NUMBER | |
| System control number | (OCoLC)1082136127 |
| Canceled/invalid control number | (OCoLC)1082317751 |
| 035 ## - SYSTEM CONTROL NUMBER | |
| System control number | (OCoLC-P)1082136127 |
| 050 #4 - LIBRARY OF CONGRESS CALL NUMBER | |
| Classification number | QH447 |
| 072 #7 - SUBJECT CATEGORY CODE | |
| Subject category code | SCI |
| Subject category code subdivision | 007000 |
| Source | bisacsh |
| 072 #7 - SUBJECT CATEGORY CODE | |
| Subject category code | SCI |
| Subject category code subdivision | 008000 |
| Source | bisacsh |
| 072 #7 - SUBJECT CATEGORY CODE | |
| Subject category code | SCI |
| Subject category code subdivision | 010000 |
| Source | bisacsh |
| 072 #7 - SUBJECT CATEGORY CODE | |
| Subject category code | SCI |
| Subject category code subdivision | 055000 |
| Source | bisacsh |
| 072 #7 - SUBJECT CATEGORY CODE | |
| Subject category code | PS |
| Source | bicssc |
| 082 04 - DEWEY DECIMAL CLASSIFICATION NUMBER | |
| Classification number | 572.8/6 |
| Edition number | 23 |
| 100 1# - MAIN ENTRY--PERSONAL NAME | |
| Personal name | Tiana, G. |
| Fuller form of name | (Guido), |
| Relator term | author. |
| 245 10 - TITLE STATEMENT | |
| Title | Modeling the 3D conformation of genomes / |
| Statement of responsibility, etc | Guido Tiana, Luca Giorgetti. |
| 264 #1 - | |
| -- | Boca Raton : |
| -- | CRC Press, |
| -- | [2019] |
| 264 #4 - | |
| -- | ©2019 |
| 300 ## - PHYSICAL DESCRIPTION | |
| Extent | 1 online resource. |
| 336 ## - | |
| -- | text |
| -- | txt |
| -- | rdacontent |
| 337 ## - | |
| -- | computer |
| -- | c |
| -- | rdamedia |
| 338 ## - | |
| -- | online resource |
| -- | cr |
| -- | rdacarrier |
| 490 1# - SERIES STATEMENT | |
| Series statement | Series in computational biophysics ; |
| Volume number/sequential designation | 4 |
| 505 0# - FORMATTED CONTENTS NOTE | |
| Formatted contents note | Cover; Half Title; Series Page; Title Page; Copyright Page; Contents; Preface; Editor; Contributors; 1: Job Dekker; 1.1 Introduction; 1.2 Chromosome Conformation Capture; 1.3 3C Variants to Obtain Genome-Scale and High-Resolution Chromatin Interaction Matrices; 1.4 Insights Obtained From Chromosome Interaction Data; 1.5 Dynamics and Cell-to-Cell Variation in Chromatin Interactions; 1.6 Polymer Models for Chromosome Folding; 1.7 Mechanisms of Chromosome Folding and Nuclear Organization; 1.8 Future Perspective; Acknowledgments; Part 1: First-Principles Models; 2: Cédric Vaillant and Daniel Jost |
| 505 8# - FORMATTED CONTENTS NOTE | |
| Formatted contents note | 2.1 Introduction2.2 3D Chromatin Organization and Epigenomics; 2.3 Epigenome-Driven Phase Separation of Chromatin; 2.3.1 Block copolymer model; 2.3.2 Simulation methods; 2.3.3 Phase diagram of the model: Towards (micro) phase separation; 2.3.4 Comparison to experiments; 2.3.5 A dynamical, out-of-equilibrium and stochastic organization; 2.3.6 Relation to other approaches; 2.4 Role of 3D Organization in Epigenome Stability; 2.4.1 The "Nano-Reactor" hypothesis; 2.4.2 Epigenomic 1D-3D positive feedback; 2.4.3 The living chromatin model; 2.4.4 Stability of one epigenomic domain |
| 505 8# - FORMATTED CONTENTS NOTE | |
| Formatted contents note | 2.4.5 Stability of antagonistic epigenomic domains2.4.6 Towards a quantitative model; 2.5 Discussion and Perspectives; Acknowledgments; References; 3: Simona Bianco, Andrea M. Chiariello, Carlo Annunziatella, Andrea Esposito, Luca Fiorillo, AND Mario Nicodemi; 3.1 Introduction; 3.2. The Basic Features of the Strings AND Binders Switch (SBS) Model; 3.2.1 The strings and binders switch model; 3.2.2 The phase diagram of the SBS homopolymer; 3.2.3 A switch-like control of folding; 3.2.4 Critical exponents of the contact probability; 3.3. A Model of Chromatin Folding |
| 505 8# - FORMATTED CONTENTS NOTE | |
| Formatted contents note | 3.3.1 The mixture model of chromatin3.3.2 Pattern formation (TADs) in the SBS block copolymer model; 3.4 The SBS Model of the Sox9 Locus in mESC; 3.4.1 Molecular nature of the binding domains; 3.5. Predicting the effects of mutations on genome 3D architecture; 3.6 Conclusions; Acknowledgments; References; 4: Leonid A. Mirny and Anton Goloborodko; 4.1 Introduction; 4.2 Physics of Loop Extrusion and Chromosome Organization; 4.2.1 Loop extrusion during mitosis; 4.2.2 Loop extrusion during interphase; 4.3 Elements of Polymer Simulations; Acknowledgments; References |
| 505 8# - FORMATTED CONTENTS NOTE | |
| Formatted contents note | 5: C. A. Brackley, M. C. Pereira, J. Johnson, D. Michieletto, and D. Marenduzzo5.1 Hi-C Experiments: Compartments, Domains And Loops; 5.2 The Transcription Factor Model: The Bridging-Induced Attraction, Protein Clusters and Nuclear Bodies; 5.3 The Transcription Factor Model: The Bridging-Induced Attraction Drives Chromosome Conformation; 5.4 The Active and Diffusive Loop Extrusion Models; 5.5 Some Consequences of the TF and LE Models; Acknowledgments; 6: Fabrizio Benedetti, Dusan Racko, Julien Dorier, and Andrzej Stasiak; 6.1 Introduction |
| 520 ## - SUMMARY, ETC. | |
| Summary, etc | This book provides a timely summary of physical modeling approaches applied to biological datasets that describe conformational properties of chromosomes in the cell nucleus. Chapters explain how to convert raw experimental data into 3D conformations, and how to use models to better understand biophysical mechanisms that control chromosome conformation. The coverage ranges from introductory chapters to modeling aspects related to polymer physics, and data-driven models for genomic domains, the entire human genome, epigenome folding, chromosome structure and dynamics, and predicting 3D genome structure. |
| 588 ## - | |
| -- | OCLC-licensed vendor bibliographic record. |
| 650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Genomes |
| General subdivision | Data processing. |
| 650 #0 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | Genomics |
| General subdivision | Technological innovations. |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | SCIENCE / Life Sciences / Biochemistry. |
| Source of heading or term | bisacsh |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | SCIENCE / Life Sciences / Biology / General |
| Source of heading or term | bisacsh |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | SCIENCE / Biotechnology |
| Source of heading or term | bisacsh |
| 650 #7 - SUBJECT ADDED ENTRY--TOPICAL TERM | |
| Topical term or geographic name as entry element | SCIENCE / Physics |
| Source of heading or term | bisacsh |
| 700 1# - ADDED ENTRY--PERSONAL NAME | |
| Personal name | Giorgetti, Luca, |
| Relator term | author. |
| 856 40 - ELECTRONIC LOCATION AND ACCESS | |
| Materials specified | Taylor & Francis |
| Uniform Resource Identifier | https://www.taylorfrancis.com/books/9781315144009 |
| 856 42 - ELECTRONIC LOCATION AND ACCESS | |
| Materials specified | OCLC metadata license agreement |
| Uniform Resource Identifier | http://www.oclc.org/content/dam/oclc/forms/terms/vbrl-201703.pdf |
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